Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
nested design
•
reset
2
votes
14
replies
1.6k
views
How to account for population variation within regions in DESeq2?
multifactor
nested design
deseq2
7.7 years ago
swaegers.janne
• 0
2
votes
13
replies
1.5k
views
How to account for population variation within regions in EdgeR?
edger
multifactor
nested design
7.8 years ago • updated 7.7 years ago
swaegers.janne
• 0
0
votes
5
replies
1.8k
views
Can I add subject level effect in DESeq2 and pull the correct contrast?
deseq2
interaction model
nested design
7.2 years ago
glocke01
▴ 10
4
votes
5
replies
2.5k
views
edgeR- DE analysis with no replicates
edger
differential gene expression
without replicate
nested design
help
updated 7.9 years ago by
Aaron Lun
★ 28k • written 7.9 years ago by
knipehf
• 0
4
votes
4
replies
1.3k
views
edgeR: Choice of reference group in nested model
edgeR
model.matrix
nested design
reference group
updated 6.1 years ago by
Aaron Lun
★ 28k • written 6.1 years ago by
ri.lars
▴ 40
5
votes
4
replies
1.2k
views
Finding genes respond differently to treatment between many genotype comparison
edgeR
nested design
differential expression
updated 6.1 years ago by
Gordon Smyth
50k • written 6.1 years ago by
chiayi
• 0
0
votes
3
replies
1.4k
views
How to remove nested batch effects with removeBatchEffect?
edgeR
removeBatchEffect
nested design
updated 7.6 years ago by
Aaron Lun
★ 28k • written 7.6 years ago by
Jenny Drnevich
★ 2.0k
0
votes
3
replies
2.2k
views
Individuals nested within blocks in DESeq2
deseq2
nested design
updated 5.8 years ago by
Michael Love
42k • written 5.8 years ago by
xie186
• 0
0
votes
3
replies
4.6k
views
DESeq2 Multiple Variable Nested Design
deseq2
multiple factor design
nested design
interaction term
updated 7.0 years ago by
Michael Love
42k • written 7.0 years ago by
zahra.aboukhalil
• 0
0
votes
3
replies
982
views
Is this procedure necessary in DESeq2 for my data
deseq2
multiple factor design
nested design
6.3 years ago
michael.steffen
▴ 20
1
vote
2
replies
1.3k
views
DESeq2 design nested or time course
deseq2
nested design
updated 5.7 years ago by
Michael Love
42k • written 5.7 years ago by
katarina.truve
• 0
1
vote
1
reply
1.0k
views
edgeR: Nested interactions model matrix MISSING COEFFICIENTS
limma
edger
nested design
updated 7.7 years ago by
Ryan C. Thompson
★ 7.9k • written 7.7 years ago by
xluong
• 0
1
vote
1
reply
1.1k
views
post hoc analysis on nested model
nested design
post hoc
edgeR
updated 6.0 years ago by
Aaron Lun
★ 28k • written 6.0 years ago by
ashley.lu
• 0
1
vote
1
reply
1.2k
views
EdgeR--multi-factorial nested design
edger
nested design
rnaseq
updated 9.0 years ago by
Ryan C. Thompson
★ 7.9k • written 9.0 years ago by
mrwarner09
• 0
3
votes
1
reply
2.4k
views
Nested design in DESeq2
deseq2
Nested design
random variable
updated 9.0 years ago by
Michael Love
42k • written 9.0 years ago by
Silva
• 0
15 results • Page
1 of 1
Recent ...
Replies
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…
Comment: Errors in chromosome annotation-biomaRt
by
blackwidowzzz
• 0
I recommend using a different dataset specific to your rat genome assembly version 8. You can search for available datasets within Ensembl …
Answer: Errors in chromosome annotation-biomaRt
by
James W. MacDonald
66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat
by
James W. MacDonald
66k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons
by
James W. MacDonald
66k
In that case, probably easiest to subset to the groups being compared.
Votes
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
Comment: DESeq2- Mysterious interaction suppresses DEGs
Awards
• All
Popular Question
to
bas_work
▴ 30
Popular Question
to
landenshanie
▴ 40
Popular Question
to
minardsmitha
▴ 10
Teacher
to
Vincent J. Carey, Jr.
6.7k
Popular Question
to
Mike
• -60
Locations
• All
Germany,
1 minute ago
European Union,
11 minutes ago
United Kingdom,
12 minutes ago
France/Marseille/Inserm,
18 minutes ago
Slovakia,
37 minutes ago
Traffic: 687 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6